gesmira

Hi, Have you tried setting the only.pos parameter to equal true: `all.markers

Hi, what are the sizes of your datasets in `sc.list`? `k.weight` (the number of neighbors to consider when weighting anchors) in `IntegrateData()` defaults to 100 so if one of your...

Have you tried also setting `k.filter` in`FindIntegrationAnchors() `before you run `IntegrateData()`? For example: ``` sc.anchors

Just to see if the issue is due to the small dataset, are you able to run the integration through without it?

Hi, Thanks for pointing this out! We are actively looking into a fix. As you mentioned, I would avoid using the `relative `parameter for now. As a quick fix, you...

Hi @NikicaJEa, Apologies that we have not yet gotten a chance to look into this deeply as we prepare for the Seurat 5.0.2 release. In the meantime, does the workaround...

Hi, How did you set the variable features in your object? Can you try running `FindVariableFeatures` and set `nfeatures` to 479 just to extract all the features as variable features...

Hi all, please refer to the [new beta release of Seurat v5](https://satijalab.org/seurat/index.html) for support for analyzing and integrating large datasets!

Is object.list a list? If so, the code you're running won't work as it is supposed to run on a single seurat object at a time. If object.list is an...

Hi @jlmalin, Can you show the output of `mrgd` before and after running `JoinLayers()`?