Georgette Tanner

Snakemake workflow query

1

Hi Gavin I've been running the Titan snakemake workflow and would be grateful if you could clarify a few things for me: 1. In the optimalClusterSolution.txt file, what does the...

- Added a new mode "rbk" (rapid barcode kit) to replicate the read distribution seen in Nanopore amplicon rbk data, where forward reads are enriched at the amplicon 3' end...

Purity estimate =NA despite copy numbers present

19

Hi I've noticed that the majority of my samples (WES, ~60-250x) are being predicted to have ploidy=2.00, purity=NA. I understand that this can happen when there's a lack of copy...