GarrettJenkinson

Bumping this issue as it currently also prevents use of this package on compute cluster nodes that lack internet access. Ideally, this package should be able to get imported without...

Yes it should have a compiled mex binary if the install went correctly. Can you verify your installation as described here in the wiki: https://github.com/GarrettJenkinson/informME/wiki/Testing%20Your%20Installation A common problem in compiling...

Hi Lucas, so Jordi has asked all the right questions while I've been dealing with movers, etc. to get at the heart of your issue. I will chime in with...

Thanks for the compliments :) I hope informME will work for your data even though it is not tailored to it. Regarding truncating the reference genome to be only the...

Hello and thank you for your interest in our pipeline. I think you are running into problems because PBS is subtlely different from SGE, and the example submission scripts are...

Thank you so much for the compliments! I hope v0.3.0 can get you up and running. Please let me know if you run into troubles there and I will try...

This is the first I am hearing about the incompatibility although I have not tested against more recent bismarks. Please keep me updated with your findings here. Also to ensure...

It is strange that you are having trouble with both repos, which are totally independent and written in different programming languages. So this might mean it is an OS/dependency issue....

A common issue can be the compatibility of your gcc and matlab versions, see here: https://www.mathworks.com/support/requirements/previous-releases.html Did `mex -setup` work OK as described here? https://www.mathworks.com/help/matlab/ref/mex.html And you may want to...

Hey that is great news that you got it installed and the test data passed through correctly! Regarding your most recent issues: please keep your bam files and your reference...