NINJA-OPS
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GabeAl
Ninja Is Not Just Another OTU Picking Solution
Whenever I run NINJA with the -F option, it fails with the following output. All other params work fine. ``` (base) @MAC204241 bin $ python ninja.py -i ~/Desktop/reads/forward.fasta,/Users/massoudmaher/Desktop/reads/reverse.fasta -o ~/Desktop/reads_ninja_F...
Hello NINJA-OPS developers, Thank you for creating NINJA. It is very quick indeed! I have a question about creating the database. SILVA just release a new database 132 and I...
Hey NINJA-OPS developers, Thank you for this wonderful software. It is very quick and simple. May I ask, does NINJA actually produce an OTU representative fasta file? Because I need...
Hi, Gabe I was trying to run NINJA-OPS on my Windows 10 BASH environment. I've got bowtie2 installed in the path and running ok. Here is the error message I...
I am trying to run NINJA on linux I get the following error on using the command python /home/genetics/Desktop/Ruchi_SRF/NINJA-OPS-master/bin/ninja.py -i /home/genetics/Desktop/Ruchi_SRF/Cases_Controls/combined/combined_seqs.fna -o ninja Running NINJA-OPS filter... "/mnt/e/Data/SNA_16S/ninja-ops/bin/ninja_filter_linux" "merge.pear.maxee1.fasta" "/mnt/e/Data/SNA_16S/ninja_otu/ninja" D...
Approximately 700 mb are being tracked on old database files within the git repo. When trying to purge the files on a fork and switch over the database folder to...
Bowtie2 writes output to stderr; print this to stdout and log. Also add percent matched to output.
