vcf-js
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GMOD
High performance Variant Call Format (VCF) parser in pure JavaScript
See https://github.com/GMOD/vcf-js/issues/79
Bumps [postcss](https://github.com/postcss/postcss) from 8.4.20 to 8.4.31. Release notes Sourced from postcss's releases. 8.4.31 Fixed \r parsing to fix CVE-2023-44270. 8.4.30 Improved source map performance (by @romainmenke). 8.4.29 Fixed Node#source.offset (by...
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Bumps [word-wrap](https://github.com/jonschlinkert/word-wrap) from 1.2.3 to 1.2.4. Release notes Sourced from word-wrap's releases. 1.2.4 What's Changed Remove default indent by @mohd-akram in jonschlinkert/word-wrap#24 🔒fix: CVE 2023 26115 (2) by @OlafConijn in...
Bumps [semver](https://github.com/npm/node-semver) from 5.7.1 to 5.7.2. Release notes Sourced from semver's releases. v5.7.2 5.7.2 (2023-07-10) Bug Fixes 2f8fd41 #585 better handling of whitespace (#585) (@joaomoreno, @lukekarrys) Changelog Sourced from semver's...
Private class fields are natively supported on nodejs v12+ Previously we were transpiling down to es5 to maintain nodejs compatibility, but es5 could not have private class fields transpiled down....
Examples volvox 1000g example, with PEDIGREE ``` ##fileformat=VCFv4.1 ##fileDate=20090805 ##source=myImputationProgramV3.1 ##reference=file:///seq/references/1000GenomesPilot-NCBI36.fasta ##contig= ##phasing=partial ##source=BCM:SNPTools:hapfuse ##reference=volvox_example ##ALT= ##contig= ##SAMPLE= ##SAMPLE= ##PEDIGREE= ##PEDIGREE= ##PEDIGREE= ##FILTER= ##FILTER= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO=...
At PAG a user gave me an idea for plotting many genotypes at once on the VCF track. This is something that was done in jbrowse 1 with multivariantviewer, but...
Just a wishlist item but one with possibly useful data savings https://www.biorxiv.org/content/biorxiv/early/2019/04/17/611954.full.pdf