AvP

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AttributeError: 'str' object has no attribute 'append'

5

hello,when I run the prepare.py,I got this problem,how can I solve it? Traceback (most recent call last): File "/share/home/bgi_cwangzf/softare/AvP/depot/prepare.py", line 34, in from depot.PetIO import check_programs, get_outdir, progress, open_file File...

wangzefei446

Error parsing GFF3 file for AvP hgt local score analysis

9

Your software has worked really well for me! I'm now trying to run the HGT local score script but am getting errors parsing the GFF3 file. ``` Traceback (most recent...

aldendirks

add HGTrobustness_parsing This script, HGTrobustness_parsing.py, is designed to Facilitate a phylogenetic validation of putative Horizontal Gene Transfer (HGT) events based on a comprehensive analysis involving protein counts and taxonomic ratios...

CaroleBelliardo

taxonomy_nexus.txt file empty

6

Hello, Thanks for this tool. I am running the pipeline using blast and the nr database. The pipeline seems to work but all my HGT candidates are classified as UNKNOWN....

mgarl-10