minia
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GATB
Minia is a short-read assembler based on a de Bruijn graph
Hi, Can I use minia as a rna-seq denovo assembler? Best, Kun
Hello - I am trying to troubleshoot a genome assembly, and in reading the minia log file I see several thousand instances of "Weird, there was supposed to be an...
Hi, I am looking for some assemblers to assemble a high heterozygous rate plant genome(diploid, het rate > 2%, haplotype genome size ~3.6G). And I want to know how to...
as evidenced by https://serratus-public.s3.amazonaws.com/rce/assembly/report_first_1k.tsv after some high depth, coronaSPAdes can assemble, Minia cannot. Might be true for high-coverage parts of metagenomes too
In [DSK: Pass 1/1, Step 2: counting kmers ] the memory limit seems to be ignored. Minia went over the ram limit and entered SWAP.
Hi Minia Creators, Did you have any idea/clues about the behaviour of Minia on a targeted genes with high ploidy samples (tumors) ? best Regards, JB
