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Published 20 hours ago • verified publisher icon GATB
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GATB Minia assembly pipeline

Results 6 gatb-minia-pipeline issues
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Flag to remove intermediate files

4 comment

Hello, Is there a flag/option to remove intermediate files (SAM, and the .glue files specifically) during a run of the pipeline? I'm running a large assembly and the folder is...

bstamps avatar bstamps

BESST: error: argument -orientation is required

3 comment

Hello! I am trying to use GATB-minia-pipeline to assemble a genome. Because my storage is limited, I am not doing a multi-k but instead a k=41. the assembly with minia...

Inexperiencedresearcher avatar Inexperiencedresearcher

ZeroDivisionError while running BESST

1 comment

Greetings, I've been using gatb-minima-pipeline for a while now for a de novo assembly software benchmark, available at [Github](https://github.com/cimendes/LMAS). I've been running it so far without issue with real data,...

cimendes avatar cimendes

Release package?

It would be good to have this as a binary/source release package like other members of the suite.

levlafayette avatar levlafayette

GFA output

1 comment

Is it possible to obtain GFA output from the assemblies created by this pipeline?

ekg avatar ekg

save the stdout to a [prefix].log.txt file

1 comment

right now we don't log any output, it would be good to

rchikhi avatar rchikhi

enhancement

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GATB Minia assembly pipeline

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