solidity-custom

[ctseto]

From a previous github issue in re Simka:

"If you still need to recover kmer sequences, for instance recovering subsets of kmers according to their presence/absence in some datasets, you may have a look at the software DSK : http://github.com/GATB/dsk and its option -solidity-custom."

I presume it is dsk -file contigs1.fa,contigs2.fa -solidity-kind custom -solidity-custom , though I'm not quite sure what the -solidity-custom option is specifying for. Is it a file with a list of kmers ("specifies list of files where kmer must be present"). I generally get "Kmer solidity custom has different number of values (11) than banks (2)"; where banks appears to correspond to the number of files appended to flag -file.