Friederike Hanssen

Results 91 issues of Friederike Hanssen

not sure how to actually use touch in the context here but I am happy to change it? or can we push this to the next release? _Originally posted by...

We are overcomputing the dictionary a bit. There are a number of tools that don't actually need it. At the moment, it is only excluded for controlfreec, msisensor2, and annotation...

enhancement

### Description of feature cc @lescai We receive many questions on how to run CNVkit and correctly configure the parameters and using custom configurations. We should add a tutorial/guide on...

enhancement

### Description of feature For now we pretty much only have the fasta, but gotta start somewhere :)

enhancement

Closes #682 ## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...

### Description of the bug When creating a new module in the modules repo with 3.4.0dev, the creation itself appears to work, but still the command fails ungracefully: ### Command...

bug

This PR aims to improve the order of the Nextflow schema by reorganizing sections and adding defaults for enhanced readability. Changes - Reorganized schema sections: Moved input_output_options to the top...

I am unable to export the seqera compute environment with: ``` tw compute-envs export -w "$ORGANIZATION_NAME/$WORKSPACE_NAME" -n seqera-compute Exception in thread "main" org.graalvm.nativeimage.MissingReflectionRegistrationError: The program tried to reflectively invoke method...

squad-unifiedcompute

Organisations can have a logo, when added manually in platform. At the moment, there is no flag to add logos when creating orgs via `tw`. This would be helpful to...

squad-core

The grouping and splitting training is using code duplication to clarify some concepts which could be simplified for a cleaner implementation. While it makes sense to leave this for teaching...

improve
side quests