Friederike Hanssen

hi @mimifp did the rerun work?

Hey! Out of curiosity. Did you benchmark this? I remember it worked faster for me on small datasets but with an actual WGS it was the same or longer. It...

I think it is the fact we only check for uniqueness with lane https://github.com/nf-core/sarek/blob/6aeac929c924ba382baa42a0fe969b4e0e753ca9/assets/schema_input.json#L48 but not individually.

no, because you can have the same sample split over multiple lanes. I think we need to prevent overwriting. I suspect it is overwritten on the mapping level @famosab? Can...

So far we haven't had any plans for this. Can you elaborate what would be needed for this? from quick googleing: just a conversion step for spring->fastq?

@nvnieuwk @mirpedrol is this something that could be done on the nf-validation side or out of scope?

Didn't you test it on your side and it worked fine?

excited for this one!

aws full size test results so master

Hmmm so this is somewhat expected because the tool needs intervals, however this should be caught by the input validation. Thanks for reporting