Fernando Jimenez

Results 3 issues of Fernando Jimenez

TPM salmon output for inter-sample comparisons (aim: classify patients by the level of expression of one gene of interest)

HI, Maybe this is not the best place to ask this, I am aware. But as the minds behind Salmon I guess is going to be the best possible answer....

phylip format using snippy-core with --noref and --aformat=phylip

Hi, I am following this tutorial to produce phylogenetic trees: https://aschuerch.github.io/MolecularEpidemiology_AnalysisWGS/09-SNPphylo/index.html I used the fastq files of my bacterial isolates using the fast of the original one as a reference...

Which test is used for multiple individual boxplots of gen expression across three groups + adj-PVal

Hi!! I have been reading some of the issues about this topic, but not sure which one to follow since I tried different ones with different results. My case: I...