Flu09

i followed this vignette to create a seurat object then moved it to a different computer to do normalization etc.., so the path changed for the BP folder. it is...

> write_matrix_dir(mat = data, dir = gsub(".h5ad", "_BP", file.path)) Warning: Matrix compression performs poorly with non-integers. • Consider calling convert_matrix_type if a compressed integer matrix is intended. i downloaded an...

ram and threads

1

what are the requirments for dropest to work. I will submit a job on a cluster and will need to insert ram and number of threads. thank you.

double free or corruption (out)

7

sce

trial

clusters

1

Hello, I performed label transfer using Symphony in Python, I retained only the transferred annotations for further analysis using Seurat. However, upon re-clustering the data in different resolutions with Seurat,...

general question

2

does it make sense to make an object of sorted samples that should contain a specific cell type and another object from a different study that contain a different cell...

how to show variables?

2

hello, sorry for the naive question but I have an issue. I would like to see the variables in R and the plots as in this https://github.com/REditorSupport/vscode-R/wiki/Sidebar-user-interface#workspace-viewer. attached in the...

In the python package one can do adata.raw = adata to activate the raw slot How to do that in the R package?

class S4 is not subsettablle

9

I submitted the same question at https://github.com/satijalab/seurat/issues/8604 I just do not know the source of the issue if its the BPCells library or Seurat. but this issue seems to happen...