Flu09
Flu09
splatter cluster split into three parts  splatter cluster is not split here
May I ask which TF list did you end up using?
i tried only with library(zellkonverter) and the issue persisted. Yes, I am using slurm and conda environment. Registered S3 methods overwritten by 'zellkonverter': method from py_to_r.numpy.ndarray reticulate py_to_r.pandas.core.arrays.categorical.Categorical reticulate ℹ...
Thank you. I will give the AnnData2SCE() a try. It is the neurons object at https://cellxgene.cziscience.com/collections/283d65eb-dd53-496d-adb7-7570c7caa443 (wget https://datasets.cellxgene.cziscience.com/a5463d8f-07df-4870-8cae-bc504de762c8.h5ad)
I tried AnnData2SCE() with and without conda and still got the same issue : double free or corruption (out). **With module load R** Java Development Kit version 19.0.1 is now...
@ChuanXu1 Can you explain more about the latent space idea and harmony?. If I integrated using harmony in R then converted my object to h5ad then provided celltypist with the...
I see thank you but if i will combine two studies and i noticed that the overall counts in one study are fewer than the other. should the annotation by...
Hello, I run a new test on the file. This time I did not add the metadata nor imported the dim reduction. and I got this time a 'memory not...