Bismark

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Visualizing the CpG, CHG and CHH in Seqmonk

1

Hi Felix, I have two questions. 1) I managed to get my COV files uploaded onto Seqmonk and got to visualizing the probes using 'Bisulphite Methylation Over' pipeline but I...

lahyusof

Forward read data look great, paired end and reverse reads look erroneous

2

Hi Felix, I'm hoping you can help with an issue I'm having with paired end sequencing. I'm sequencing an amplicon that is 350bp long. The first ~300 bases on the...

robertocnava

Getting strand information from/for bedGraph/coverage files

1

Is there a straightforward way to get strand information for the bedGraph or coverage files produced by Bismark, without generating a genome-wide cytosine report? I would like to avoid that...

jonasbucherETH