Felix Ernst

geom_cladelab removing bar causes warning

2

Hi. when I try to remove the bar as suggested by https://yulab-smu.top/treedata-book/chapter10.html a warning is emited. Alternatively, setting the barsize to zero also doesn't remove the bar. ``` > library(ggtree)...

bug in rotate

2

Hi, rotate behaves peculiar, when rotating a node of a tree. ``` # data from tree book tree internal node number to specify a clade. If NULL, using the whole...

clade labels orientation problem with angle = "auto"

3

Hi, I have a problem plotting clade labels. They seem to oriented inverted, if I plot them using `angle = "auto"` ``` > library(ggtree) > library(ape) > x p p...

geom_nodelab reports an error, when using the offset argument.

7

Hi, `geom_nodelab` reports an error, when using the `offset` argument. ``` > nwk tree td td$label # works > ggplot(tidytree::as.treedata(td), aes(x, y)) + geom_tree() + theme_tree() > # works >...

batch effects

2

Moved from FelixErnst/mia#31

Hi, the following example reports an error ``` library(S4Vectors) library(IRanges) hits R version 3.6.2 (2019-12-12) #> Platform: x86_64-w64-mingw32/x64 (64-bit) #> Running under: Windows 10 x64 (build 18363) #> #> Matrix...

Integer overflow

10

Hi, Similiar to #432 I get a warning on an integer overflow when running `dada` ``` dadaForward