FarzanehRah

Positive control contamination

1

Hi, I am curious if `Decontam `can remove contamination from _**control positives**_ that exhibit high levels of unexpected taxa, or if there are alternative methods for identifying and removing contamination,...

running reidentify-DMR on the DMRfind results

6

Hi, I'm currently attempting to run `reidentify-DMR` on the` DMRfind` results. However, I encountered the following message, setting --sig-cutoff to 1 doesn't change anything: ``` Begin FDR Correction Wed May...

Optimizing Time and Memory Usage for Large BAM Files

6

Hi, I've been trying to use ATACseqQC for quality control of some plant BAM files (exceeding 100GB in size). However, I encountered difficulties when attempting to run it, even after...

Hi, I'm working on a project where the researcher provided me with two tables for transcript and gene read counts prepared by HISAT, StringTie, and prepDE.py. I have completed the...