Fan-iX

Results 18 issues of Fan-iX

Plot tags are missing for `free()` plots when `theme(plot.tag.position = ...)` is applied. ``` free(ggplot())+(ggplot()+theme(plot.tag.position = c(0, 0)))+plot_annotation(tag_levels = 'A') ``` ![free plot without tagPosition](https://github.com/thomasp85/patchwork/assets/61686936/6507dea6-b1c3-4a90-98b8-aaa609e033fa) ``` ggplot()+free(ggplot()+theme(plot.tag.position = c(0, 0)))+plot_annotation(tag_levels...

I can change the title of a terminal window by setting the xterm title using `echo -ne "\e]0;some title\007"`, so that I can distinguish between different terminal windows. Is it...

enhancement
UX
keyboard

When I join SNP and INDEL entries using `bcftools norm -m +any`, one of the `AN` ("Total number of alleles in called genotypes") value is discard. Here is a reproducible...

When I am using a CRAN/BioC mirror that doesn't work, `install.package` and `BiocManager::install` will show a message that the URL fails: ``` > options(repos = c(CRAN = "https://a.cran.mirror.that.doesnt.work/"),BioC_mirror="https://a.bioc.mirror.that.doesnt.work/") > install.packages("ggplot2")...

bug

### Prerequisites - [x] make sure your are using the latest release version - [x] read the [documents](https://guangchuangyu.github.io/software/treeio/documentation/) - [x] google your quesion/issue ### Describe you issue Sometimes I have...

I am using gffread to convert a gff file to gtf, but meet with some problem on trans-splicing items. The original file is the gff annotation of _Drosophila melanogaster_ reference...

`` is no longer included in `` in newer `gcc` compilers, and should be included explicitly. Should fix #92

I mount a remote file system to my local machine using `sshfs -o umask=000` in WSL1. I am able to read and edit remote files (using `vi`), but when I...

I think pinning the window to the top would be a handy feature, especially for those text editor windows. (The placement of the trigger control may need some discretion, though.)

enhancement
UX

Here is a nexus output of a MEGA `timetree` (RelTime-ML) analysis: ``` #NEXUS Begin Taxa; Dimensions ntax=4; TaxLabels A B C D ; End; Begin Trees; Translate 1 A, 2...