Fadwa EL KHADDAR

Loop in snakemake

2

Hii I have a Snakefile that extracts a list of SRR accession numbers and stores them in a CSV file. Subsequently, I have a rule for downloading these files, followed...

Using Snakemake in GCP VM

3

Hi ! Thank you for snakemake, I'm working on a project that aims to analyse big files (SRA files) and i want to store them in GCP buckets. I'm working...

Hi, Thank you for your software It's been a long time since i've started using your software but recently when i run this command : `srun -A gpu_group -p gpu...

no parallelize with snakemake

4

Hi, I am working on a pipeline that downloads SRR files, and to optimize the download time, I opted for your tool. However, I am encountering an issue. I have...

Using Onedata with Galaxy for Large Dataset Storage (300GB+): Questions on Storage Providers and Setup

6

Hello, I’m currently working on a project with the Galaxy Project that involves processing very large datasets (over 300 GB). Our team is exploring Onedata as a potential solution for...