Fabian Isensee
Fabian Isensee
Hi, you said that you are working with 2D data and yet your images are 3D (shape (1, 51, 576, 764)). How is that possible? Best, Fabian PS: you can...
I haven't gotten an email yet - it's probably stuck somewhere and will show up in my inbox soon. Have you used the same splits for training nnU-Net and your...
Just to let you know that I am currently running a training. In the future, please make sure the script you send me actually work ;-) There were a couple...
Hi, I can confirm that the Dice scores are really low for that dataset. From what I can see the segmentation task is just too difficult with too few cases...
There is a lot of overfitting and this could be a sign that high inter-rater variability is present. It is difficult for me to interpret the data because I would...
It seems like you still have values in your segmentation that are not supposed to be there. Please run `nnUNet_plan_and_preprocess` with the `--verify_dataset_integrity` flag
hm in that case it's really hard to say. Would you be able to share your dataset?>
Hi, your GPU ist not set up correctly. I cannot help you with that - please google the issue :-) There are plenty of threads about this already
Windows does not work unfortunately try @MRCWirtz master: https://github.com/MRCWirtz/nnUNet-1
You will need to write a corresponding nnUNetTrainerV2_CascadeFullRes trainer, unfortunately :-) I have not yet bothered to do so