Fabian Isensee

This uses SimpleITK and works with KiTS: ```python import os import tempfile from pathlib import Path from concurrent.futures import ProcessPoolExecutor, as_completed import SimpleITK as sitk def _get_orientation(img: sitk.Image) -> str:...

Raw KiTS case: [case_00004_0000.nii.gz](https://github.com/user-attachments/files/23261213/case_00004_0000.nii.gz) RAS transformed KiTS case (with SimpleITK variant): [case_00004_0000.nii.gz](https://github.com/user-attachments/files/23261218/case_00004_0000.nii.gz) If you run moose 3.1.1 on these two you should be able to reproduce my results :-)

Hah I found what's going on! I find the required folder structure for CLI clunky (sorry 😅 ) + wanted to do my own thing so I wrote a python...

Thanks a lot! I think there are two common use cases that the current CLI interface doesn't cover (or I have not found it): - the user wants to segment...

Honestly I have not had this on my radar. And I have no idea what could be causing this. Do you have any idea?

Is this still a problem though?

Hi there, thanks for the comprehensive writeup. I believe however that there are some thins you did not interpret quite right, leading to the perception there is a bug or...

Hey, that's quite interesting! I have not been running a lot of systematic experiments recently. Can you please share some more details? What kind of segmentation dataset is this and...

I am running extensive experiments now comparing 2.5.1 vs 2.8.0

Experiment will run for a while still, but if we see something then this might be the culprit: https://github.com/pytorch/pytorch/issues/163539