Fabian Fröhlich

Looking at a medium sized model (254 species, 53 parameters) I get the following logging results: ``` 2020-01-16 12:32:54.528 - amici.ode_export - INFO - Finished writing J.cpp (9.83E+01s) 2020-01-16 12:32:58.874...

From what I can tell it's primarily the compilation of individual model files. I think we can probably achieve more through - [ ] optimizer header linkage ( - [...

Before adding more stuff, I would rather address #1073, maybe with keeping this in mind as a feature.

Sorry, I have very limited knowledge of DAEs, so I am probably not going to be of much help. What I can tell you: IDAs fails to compute consistent initial...

The only DAE testcase we have is the robertson mode, so there is overall very limited testing of DAEs. What I imagine could be wrong: - The functions to compute...

Found a bug https://github.com/AMICI-dev/AMICI/pull/1376. Don't think this will fix anything in this case nor whether this is still relevant, but if it is, might be worth a try to check...

IMHO probably not worth the trouble.

The reason why I was thinking about feature is that those fixed parameters, as you say, really could be anything related to the experiment. If one would train a machine...

> The default behaviour when a boost mathematical function overflows or is evaluated outside its domain is to raise an exception. This leads to AMICI crashing ungracefully, which may result...

Don't see any use of `SUNMatMatvec` there, so I would guess not ...? multiple for sparse matrices still uses our own implementation and for dense uses `dgemv`, which is fine-ish...