EugeneKim76

Thanks for Quick reply. Since my data is not published, I will show the result from buildSummary.pl using public data (http://www.repeatmasker.org/species/euaEut.html). The result was produced, using command line shown below....

Dear all, I found additional errors. runpipeline.sh line 80 sh step4-hybrid_assembly.sh ${output_dir}/core_assembly/step3_merging/contig_overlap_merge/core_sup_merged_hybridassembly0.rmoverlap.fasta $bionano_genome $errbin ${output_dir}/core_assembly/step4_hybridassembly/hybridassembly0 -> fixed sh step4-hybrid_assembly.sh ${output_dir}/core_assembly/step3_merging/contig_overlap_merge/core_sup_merged_hybridassembly0.rmoverlap.fasta $bionano_genome $bionano_errbin ${output_dir}/core_assembly/step4_hybridassembly/hybridassembly0 runpipeline.sh line 92 sh step4-hybrid_assembly.sh ${output_dir}/core_assembly/step3_merging/contig_overlap_merge/core_sup_merged_hybridassembly0.rmoverlap.fasta $bionano_genome...

Dear all, I found an additional error. The error is produced from final Overlap_merge.py of runpipeline.sh and solved by correction as shown below line 83-86 of runpipeline.sh python Overlap_merge.py \...