Estherrr1997

Ah okay thanks, I do still get the same error when running dotPlotly locally. How can I save an Robject containing the graph? Guess that will be the solution for...

Thank you very much for your help! I changed the pafCoordsDotPlotly.R file and I think I successfully created a dotplot, although I keep getting an error message. Does this error...

Thank you so much! it runs with no errors now :) Really appreciate your help!

Okay one last thing: Is it possible that, due to the changes in the pafCoordsDotPlotly.R file, the output doesn't change after creating one dotplot? For six different shark assemblies (and...

I am running it on the command line like this: admin_bi@GSYMK2:/media/admin_bi/DATA/Files_Esther/dotPlotly$ ./pafCoordsDotPlotly.R -i /media/admin_bi/DATA/Files_Esther/paf_files/blue_shark_white_shark.paf -o blue_shark_white_shark -s -t -m 500 -q 500000 -k 7 -l

Yes I have, for the different sharks I use different names, but I still get the same plots

Okay thanks I will have a look at the data. Thank you for helping me :)

> @ViriatoII > > > It's here! > > I am trying to run orthofinder on DNA data but cannot find the right flags to do it. I have tried...

For anyone having this same issue: Going into the pafR code and changing the linetype did it for me. The code I changed: if (dashes) { p