Yam Dai

[E::idx_find_and_load] Could not retrieve index file

5

Dear Dr. Fang, Thanks a lot for the tool! I am trying to create the snap file from the Cell Ranger possorted_bam.bam files. I followed the instructions: https://github.com/r3fang/SnapATAC/wiki/FAQs#cellranger_output But from...

Arabidopsis Reference

2

Here is the Arabidopsis reference built.

GenomicsDBImport sorting issue

11

## Bug Report ### Affected tool(s) or class(es) GenomicsDBImport ### Affected version(s) Latest ### Description Output from GenomicsDBImport is sorting based on alphabetic order: chr 10 ahead of chr 7...

Hi, Could I ask if SR is flagged instead of ISR for paired fastq files, what will happen? Detail: -1 and -2 are specified instead of -r. I wonder if,...

rna_genes less genes than the input data

1

Hi Kevin, I have trained a model with ./bin/train_model.py codes and raised the flag --nofilter. However, in the rna_genes.txt, I have 944 genes lost. And I checked the source code...