Eric Thomson

# Caiman Roadmap: August 2023 - August 2024 Our goals with Caiman naturally fall into three general categories: - **Usability** – make Caiman's current feature base easier to use. -...

Remove pylab imports

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# Description Will close out item on Roadmap (#1142 ). Pylab is a relic of the days when Python was trying to be like Matlab and its use is strongly...

Clarify gSiz parameter role(s)

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Looping around to something mentioned in #970 (and this is something that comes up a lot in workshops): the docs on `gSiz` are sort of all over the place, and...

refit() for CNMFE?

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- **Tell us a bit about your setup**: 1. Operating system (Linux/macOS/Windows): Windows 10. 2. Python version (3.x): 3.6.11 3. Working environment (Python IDE/Jupyter Notebook/other): Jupyter 4. Which of the...

Would be nice to add ability to save motion correction object the way Caiman already saves the CNMF object. Motion correction can take a *really* long time, and it would...

Discovered during Discussion #1178 and related to problems with loading avi that was fixed in PR #1161. Saving avi doesn't work in Windows (strangely, this functionality is in `timeseries.py`). It...

Create notebook showing how to work with NWB format

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We currently have a py module showing how to work with NWB. It would be good to put this in a notebook and explain things a bit more: this is...

I didn't realize until #1110 that `p` is defined twice in the parameters object, first as a `preprocess` value and second as a `temporal` value (it takes the same default...

Bridge to Pynapple

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I will work on connecting Caiman to Pynapple so that we have a bridge there to save final results of Caiman in a way that they can easily be loaded...

When movie shown in `embed_opencv` mode (currently in dev), it flickers. I'm not sure of the fix. We discussed it some in the PR #1080 and I posted a movie...