Eric Thomson
Eric Thomson
I've been hand-rolling augmenters using imgaug (https://github.com/aleju/imgaug), as I really like some of the options that are not available in the tf object detection api (https://stackoverflow.com/questions/44906317/what-are-possible-values-for-data-augmentation-options-in-the-tensorflow-object). For instance, I use...
Fix for issue 62: https://github.com/kushalkolar/MESmerize/issues/62 Basically, set `bord_px` to 0. I have been manually doing this with every install of mesmerize for a while, and it seems to cause no...
**Describe the bug** When I run the "inspect correlation and pnr" step of cnmfe and look at the image, there are very large edge artifacts in both the correlation image...
Added an 'export curves' button to roi manager to let people export raw calcium traces. This is a minimal initial working branch, in the sense that in we will probably...
I'm playing around with the faces example, and the sparseness metric seems to be acting a little strange in some cases (the [code is here](https://github.com/mims-harvard/nimfa/blob/3564bf6fe46b4904e828ac1d9b99f5af1fc25ed1/nimfa/models/nmf.py#L418)). I pulled it out to...
### Discussed in https://github.com/flatironinstitute/CaImAn/discussions/1298 Originally posted by **ethanbb** March 14, 2024 Hello, This is mainly a documentation suggestion. My microscope saves Scanbox files, and I saw CaImAn has support for...
# Description Issue raised with using reloaded data, the way things are serialized with hdf5, they are loaded as byte-encoded, so when you try to change parameters things don't work...
Turned off warnings and checked for upcoming deprecations. Most of these are repeated many times in the different notebooks, just noting the warnings not where they are occurring in the...
# Description Handles some minor upcoming deprecations as discussed in issue: Closes #1303 # Type of change - [X] Bug fix (non-breaking change which fixes an issue) ## Testing Tested...
# Description Fixes bug pointed out by @rcalfredson and implements fix suggested by @j-friedrich in discussion #1190 # Type of change - [X] Bug fix (non-breaking change which fixes an...