Isra

@Mayfm Same problem I tried to modify line 46 of rsync and it didn't work @jenniferlu717 any suggestion? help plzz

@SimonHegele I'm looking for a protein database for kraken2?? any idea I checked https://benlangmead.github.io/aws-indexes/k2 but I think was nucleotide-build I need proteins for more accurate results in my samples, an...

Thank you very much, Jaebeom. I hope you're having an excellent start to the week, and I appreciate you taking the time to read my comments and share your database....

Hi Jaebeom, I hope you are doing well. I recently read the latest paper from your research group, "BFVD—a large repository of predicted viral protein structures", and I must say...

Hi @shiraz-shah the metabuli reports can be used as input for pavian, after do it you can dowload a table with the full taxonomy https://github.com/fbreitwieser/pavian greetings

Hi @jaebeom-kim @borijoa I'm currently working on processing the output files from Metabuli to generate tables compatible with Phyloseq and Vegan, but I have some doubts regarding how to handle...

Hi @gilmahu I found a tool could help, you can use first taxconverter https://github.com/RasmussenLab/taxconverter and then taxometer to get the taxonomy file https://vamb.readthedocs.io/en/latest/ I hope this will help you, saludos

Hi @jaebeom-kim We developed a strategy to convert Kaiju and Kraken2 reports into phyloseq objects and tables. The approach also allows combining multiple reports into a single BIOM object that...

@jaebeom-kim I truly appreciate your work with Metabuli. One of my hopes when creating this script was that it might inspire integration of direct BIOM/Phyloseq-compatible outputs into Metabuli, since this...