Eggsorer
Eggsorer
In aptaCluster section, I ran AptaMut. In the popout window, several columns says "CMP" where it should be "CPM". Also if you pick "Raw Counts" instead of "CPM", those columns...
TL, DR: I would like to have a feature where it prints out the reason why aptasuite rejected every one of the rejected sequences. And a summary of rejected sequences....
It seems that in AptaCluster, you are performing clustering with the entire DNA sequences. In RNA aptamers, the DNA sequences contains T7 promoter which will not appear in RNA aptamer...