Alejandro Efraín Marín Peralta comments

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                                            Alejandro Efraín Marín Peralta

Unexpected global diploid results.

Why did you choose that specific number of iterations?

Question regarding VCFs and issue with the R script

Yes, I know. I looked into the code before opening the issue, but I'm still having issues with it. I'd tried both absolute and relative routes, and it's just not...

error of "struct.error: 'i' format requires -2147483648 <= number <= 2147483647"

I'm facing the exact same error. Did you find any solution??

Installation problems

Hi @andhena, I haven't tried yet. I was able to install CNVkit on a LInux server so I stopped trying on MacOS.

Error while running with OpenMS experimental design format

Sure. This is the TSV file: ``` Fraction_Group Fraction Spectra_Filepath Label MSstats_Condition MSstats_BioReplicate 1 1 /path/to/mzML/file/TECANuno_2ulMM_rep1_R1.mzML 1 2ulMM 1 2 1 /path/to/mzML/file/TECANuno_2ulMM_rep2_R1.mzML 1 2ulMM 2 3 1 /path/to/mzML/file/TECANuno_2ulMM_rep3_R1.mzML 1 2ulMM...