Eddymorphling

Hi @carsen-stringer I am using Cellpose 2.0.5. I use my own model (created with the cellpose GUI) and use the `stitch_threshold `function in the GUI when performing 3D segmentation. Should...

Just to add one more thing - when self training in the GUI, would it also be possible to choose the `initial model` to be one of a previously self-trained...

Hi, we are facing similar issues with channel naming when importing leica .lif files into into OMERO. Any advise on how to fix these issue? Thanks!

Hi. I am interested in doing something along these lines that outputs all Cellpose detected ROIs that I can later open in ImageJ or other tools. Were you able to...

Hi, Thanks for the quick response. I had it working without any issues. Would you happen to know if there is also a way to extract the top 40 cells...

> Hello! @Nespresso2000 we just released a [package](https://pypi.org/project/aind-large-scale-cellpose/) for large-scale segmentation with cellpose (2D/3D images). Still in development but it'd be nice if you give it a shot. Unfortunately, you'd...