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EBISPOT
Linked Data explorer and SPARQL endpoint
This matches `develop/7` branch of https://github.com/virtuoso-opensource. It is based on `release-1.4` branch, and so this pull request also pulls in those changes to master.
Just to let you know, I had to migrate the org.owasp plugin in the main POM, cause it was generating HTTP/404 errors, showing the old version is not aligned the...
Hi all, I came to using LODEStar again after some years, and I've had problems with this Spring block in `ebi-lode-service.xml`: ```xml ``` To me the value above is wrong,...
Currently, `lode-virtuoso-impl` depends on an artifact `virt_jena`. It seems likely to come from https://github.com/openlink/virtuoso-opensource/tree/develop/7/binsrc/jena, but I'm not 100% sure as it must be injected from elsewhere. Correspondence on the virtuoso-users...
There is a build dependency on the repository coconut.ebi.ac.uk: this is an EBI internal server and not visible outside, causing builds to fail. Can we remove this dependency?
Our newly developed lodestar isn't merged with the current master branch of lodestar, this should be done and potential conflicts fixed
When accessing any "/lodestar/describe" resources by IE11, nothing is shown.
Hello! I noticed the following little UI bug on https://medium.com/virtuoso-blog/benefits-of-a-semantic-web-of-linked-data-for-bioinformatics-62c2964357c >under "both the EBML-EBI and UniProt databases, and has been semantically combined" > screenshot, or [directly in these search results](https://www.ebi.ac.uk/rdf/services/sparql?query=PREFIX+rdf%3A+%3Chttp%3A%2F%2Fwww.w3.org%2F1999%2F02%2F22-rdf-syntax-ns%23%3E%0D%0APREFIX+rdfs%3A+%3Chttp%3A%2F%2Fwww.w3.org%2F2000%2F01%2Frdf-schema%23%3E%0D%0APREFIX+owl%3A+%3Chttp%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23%3E%0D%0APREFIX+xsd%3A+%3Chttp%3A%2F%2Fwww.w3.org%2F2001%2FXMLSchema%23%3E%0D%0APREFIX+dc%3A+%3Chttp%3A%2F%2Fpurl.org%2Fdc%2Felements%2F1.1%2F%3E%0D%0APREFIX+dcterms%3A+%3Chttp%3A%2F%2Fpurl.org%2Fdc%2Fterms%2F%3E%0D%0APREFIX+dbpedia2%3A+%3Chttp%3A%2F%2Fdbpedia.org%2Fproperty%2F%3E%0D%0APREFIX+dbpedia%3A+%3Chttp%3A%2F%2Fdbpedia.org%2F%3E%0D%0APREFIX+foaf%3A+%3Chttp%3A%2F%2Fxmlns.com%2Ffoaf%2F0.1%2F%3E%0D%0APREFIX+skos%3A+%3Chttp%3A%2F%2Fwww.w3.org%2F2004%2F02%2Fskos%2Fcore%23%3E%0D%0A%0D%0APREFIX+obo%3A+%3Chttp%3A%2F%2Fpurl.obolibrary.org%2Fobo%2F%3E%0D%0APREFIX+sio%3A+%3Chttp%3A%2F%2Fsemanticscience.org%2Fresource%2F%3E%0D%0APREFIX+faldo%3A+%3Chttp%3A%2F%2Fbiohackathon.org%2Fresource%2Ffaldo%23%3E%0D%0APREFIX+identifiers%3A+%3Chttp%3A%2F%2Fidentifiers.org%2F%3E%0D%0APREFIX+ensembl%3A+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fresource%2Fensembl%2F%3E%0D%0APREFIX+ensembltranscript%3A+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fresource%2Fensembl.transcript%2F%3E%0D%0APREFIX+ensemblexon%3A+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fresource%2Fensembl.exon%2F%3E%0D%0APREFIX+ensemblprotein%3A+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fresource%2Fensembl.protein%2F%3E%0D%0APREFIX+ensemblterms%3A+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fterms%2Fensembl%2F%3E%0D%0APREFIX+core%3A+%3Chttp%3A%2F%2Fpurl.uniprot.org%2Fcore%2F%3E%0D%0ASELECT+%3Funiprot_id+%3Funiprot_uri+%3Fisoform+%3Fseq+%7B%0D%0A+++ensembl%3AENSG00000128573+ensemblterms%3ADEPENDENT+%3Funiprot_uri+.%0D%0A++++%3Funiprot_uri+dc%3Aidentifier+%3Funiprot_id+.%0D%0A++++SERVICE+%3Chttp%3A%2F%2Fsparql.uniprot.org%2Fsparql%3E+%7B%0D%0A+%3Funiprot_uri+core%3Asequence+%3Fisoform+.%0D%0A%3Fisoform+rdf%3Avalue+%3Fseq+.+%0D%0A++%7D+%0D%0A%7D&render=HTML&limit=25&offset=0#loadstar-results-section)....
Our security team is trying out a new scanner, called netsparker. It found something that IBM AppScan never found, which is that parameters sent to the SPARQL endpoint that contain...