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GWAS Catalog Ontology and Curation Infrastructure

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Currently, editing and re-uploading a submission template in depo-curation signals that a change has occurred, and allows the curator to enable import of the edited submission into the old curation...

Type: Task

![Screenshot 2022-07-19 at 15.01.57.png](https://images.zenhubusercontent.com/5e95cce7cc796e84ca614069/77a591db-6ccb-4104-879d-260340e9fe14) EFO duplicates keep appearing on this page in the curation app: http://ves-ebi-e4-x.ebi.ac.uk:8080/gwas/curation/efotraits I have already cleaned this up last week but they have reappeared. Again I...

Add Curation at Scale talk to Related Resources page: https://www.youtube.com/watch?v=SoIGb12h_fQ

GWAS EBI Search index export file (/nfs/production/parkinso/spot/gwas/prod/data/gwas-ebi-search-index-data/studies.json) is generated during the data release build stage, but this should be exported during the data release deployment stage as this file should...

Similar ticket to https://app.zenhub.com/workspaces/gwas-59df823c4a6feb3786810391/issues/ebispot/goci/763 On the request of a user, please remove the link to the general terms of use which would usually be displayed on their GCST page. Instead,...

SNP entries are duplicated when uploading template in Curation app. This consistently occurs even when using a new template for the upload. ![image](https://user-images.githubusercontent.com/97462656/167121728-c914638d-5b47-456c-bf20-c97471a2be1e.png) https://www.ebi.ac.uk/gwas/curation/studies/95477043/associations

Type: Bug
Curation app

After completing all required steps of curation in depocuration, curators **must** be able to release studies for publication with a single action. Once triggered, studies are imported to Oracle, associations...

Epic

Deposition Sync currently runs on the Crontab in VM , we need to make it trigger through Spring scheduler to avoid dependancy on VM Cron

Bumps [mysql-connector-java](https://github.com/mysql/mysql-connector-j) from 8.0.19 to 8.0.28. Changelog Sourced from mysql-connector-java's changelog. Changelog https://dev.mysql.com/doc/relnotes/connector-j/8.0/en/ Version 8.0.29 Fix for Bug#21978230, COMMENT PARSING NOT PROPER IN PREPSTMT.EXECUTEBATCH(). Fix for Bug#81468 (23312764), MySQL server...

dependencies