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EBISPOT
GWAS Catalog Ontology and Curation Infrastructure
A weird bug in the mapping pipeline results in negative values in the DISTANCE field in GENOMIC_CONTEXT table. It shouldnt be the case. In Solr the value looks like `"ensemblMappedGeneLinks":...
# 🧬 GWAS Catalog Python package checklist Below is a big pile of checks, which I'll split out into sub-issues. We should apply it to any actively maintained repositories and...
Behaviour: Occasionally when curators re-upload a template in depo-curation after editing, the sumstats-validation is retriggered. This causes errors since typically the sumstats are no longer available in globus. Cause: Depo-curation...
## Validation library https://github.com/EBISPOT/gwas-meowdels - [X] Implement a set of pydantic types for summary statistics - [ ] Chat with team to refine types and test edge cases - [...
An error reported by Celery that it cannot find matched files for ‘gcst’: ‘GCST90671940’ in the depo staging folder (raw file is available in the Globus). Meanwhile, the [UI](https://www.ebi.ac.uk/gwas/studies/GCST90671940) did...
A user pointed out there is an issue in the studies data for the example study GCST000854, described in https://github.com/EBISPOT/goci-rest/issues/91 While we work on a fix for that, it would...
As a user, I want the API to return direct links to summary statistic files so I can work with tools like `wget` or `duckdb`. ## PGS Catalog example (direct...
Accessibility to our documentation pages would be improved by use of direct anchor links (like #what-is-gwas) to each FAQ, which helps users and bots link to specific answers. This could...
We generate a file that Zooma reads to update it with the latest GWAS annotations. The file is not longer getting updated, we think this is because it is generated...