goci
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EBISPOT
GWAS Catalog Ontology and Curation Infrastructure
Duplicate SNPs cause the data release to break and issues in data presentation, please refer to https://github.com/EBISPOT/goci/issues/1275 for more details. Ala cleaned up all the existing examples in the database...
We need a better strategy to harmonise seqGWAS data, which sometimes perform well but sometimes suffer a high level of drop-outs, depending on the dataset. Brainstorming doc is here: https://docs.google.com/document/d/1f40FNM2IEa0VW0RwKuZLsjO0GZ0rMU9JgRDuBYwftsk/edit?usp=sharing
Submission PMID 30510241 has a special license arrangement. It currently appears in sumstats export table with "-" in "Agreed to CC0" but should have "no" - c.f. PMIS 37770635 &...
The table export from sumstats download page should have proper column headers, not database fields, as follows: [sumstats table.txt](https://api.zenhub.com/attachedFiles/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBMVNFQnc9PSIsImV4cCI6bnVsbCwicHVyIjoiYmxvYl9pZCJ9fQ==--a24c5fa71476c2c882c77889b700f3858c68b60e/sumstats%20table.txt)
Example: PMID curated through old Curation App: 29058716 - 3 studies User submitted sumstats only, for 1 study: https://www.ebi.ac.uk/gwas/deposition/submission/6712402bf8167b000159f3d5 - They entered NR for sumstats in the other 2 study...
