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EBISPOT
GWAS Catalog Ontology and Curation Infrastructure
Download file for studies v1.03.1 is capped to data before 2024. Also the case for these studies-v1.03.1 files on our ftp location eg: http://ftp.ebi.ac.uk/pub/databases/gwas/releases/2024/02/12/
Several submissions have been stuck validating and need to be restarted: ✅ `6608c665db8d9f000198b901` ✅ `65f1f8330f82060001a1b6fd` 🟡 `65f9de3adb8d9f0001966a07` -- 🔴 Generate metadata for `65f9de3adb8d9f0001966a07` once the sync is complete. ✅ `66073fe60f82060001a48676`...
Following the recent round of reporting, document any limitations of current usage monitoring and propose improvements that can be implemented before the next reporting period beginning 1st July.
Several issues possibly connected: 🟡 It seems that all GCSTs created on staging since 05.04.24 have no yamls, either on staging or public FTP. -- ✅ Generate the missing YAML...
A user is unable to access the Globus directory for their submission as they are getting the error 'Directory not found' Submission: https://www.ebi.ac.uk/gwas/deposition/submission/6616bb7cdb8d9f0001fe321e
Please prioritise the sumstats associated with this publication for harmonisation https://www.ebi.ac.uk/gwas/publications/36474045
There was an issue in Python script where we got the following error -: ``` [INFO] Database connection to SPOTREL was successful [Warning] Number of studies do not match. Traceback...
Visual Schema Design and documentation for for all GWAS Databases
Occasionally SNPs are duplicated during the curation process. It looks like this happens on import to Oracle. If the studies are not yet published, the data release breaks If the...
- [ ] gwas-sumstats-harmoniser - [x] Summary statistics with HDF5 - [x] Summary Statistics File Validator - [x] gwas-sumstats-tools - [x] sum-stats-formatter - [x] eQTL-SumStats - [x] gwas-template-services - [x]...