User request for sumstats harmonisation

[ljwh2]

Please prioritise the sumstats associated with this publication for harmonisation https://www.ebi.ac.uk/gwas/publications/36474045

[karatugo]

Job <97669165> is submitted to default queue .

Update. Failed.

[karatugo]

As the prev LSF job submission failed, I submit again.

Job <98014643> is submitted to default queue <standard>.

[karatugo]

LSF job failed again. Submitted in SLURM.

Submitted batch job 4623821

[karatugo]

SLURM job failed too according to the logs. Asked for @jiyue1214 help.

[karatugo]

Need to restart again as Yue updated the code.

[karatugo]

Restarted /hps/software/users/parkinso/spot/gwas/prod/scripts/cron/start_harmonisation_pre_standard_slurm_goci1300.sh

         JOBID PARTITION NAME                                                    USER     ST TIME       NODES  NODELIST
       8384004 standard  pre_gwas_ssf_harmo                                      gwas_lsf R  0:23       1      hl-codon-05-01

[karatugo]

Failed again, need help from @jiyue1214

[jiyue1214]

The harmonised result is available on the FTP right now and could @karatugo double-check if the data is correct?

[karatugo]

Looks good to me, thanks @jiyue1214

[karatugo]

http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90132001-GCST90133000/GCST90132314/harmonised/

http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90132001-GCST90133000/GCST90132315/harmonised/

[ljwh2]

@ljwh2 to confirm

[ljwh2]

confirmed