DorothyTamYiLing

libtabixpp.so.0: cannot open shared object file

4

Hi, I have this error that seemed to be coming from freebayes, I have googled but still have no idea of how to solve it. ### freebayes-parallel reference/ref.txt 8 -p...

samtools excluded most reads

1

Hi tseemann, I am use snippy 4.6.0, and I am wondering why samtools excluded most of the reads. In the end, I got no variant (I am expecting variant), and...

Hi Caitie, I am using treeWAS in this dataset of 3000-4000 samples and 229626 unitigs. I kept running into memory error even after I adjusted the chunk size (I have...

small contigs with less than 1 fold of coverage

2

Hi Ryan, Thanks for writing Unicycler, it is a very useful tool. I ran a hybrid assembly using conservative mode (same result for normal mode) and I obtained 3 contigs,...

running SNP-dists on large sample set

2

Hi Teesmann, First of all, thanks for writing this piece of software. I am trying to run SNP-dists on a large sample set (3745 samples alignment, each with 4988504b). It...

Hi, First of all, thanks for writing this piece of software, I wonder it I can use it for detecting genome rearrangements mediated by other sequences such as IS elements?...

negative association score

2

Hi, I am getting negative association scores with my treeWAS run and I am wondering if that is normal? Does negative association mean no association or something else? Thanks, Dorothy

Hi Easyfig author, I am trying to colour multiple genes in my plasmids for visualisation using Easyfig. Here is how I specified the colour of one gene (for example repB):...