Dietrich Epp Schmidt

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icon company University of Maryland icon location College Park, MD icon location Microbiologist, Ecologist, Agriculturalist, R Shiny.

Results 5 comments of Dietrich Epp Schmidt

Setting authorization key matR

Thanks; now I get this error: > library(matR) > auth.MGRAST() Error in auth.MGRAST() : could not find function "auth.MGRAST" *Dietrich Epp Schmidt, PhD Candidate* *Graduate Research Assistant* *UMD Environmental Science...

Setting authorization key matR

I've tried both approaches, still same problem. > library(matR) Loading required package: BIOM.utils BIOM.utils (0.9 dbcb27) matR: metagenomics analysis tools for R (0.9.1) > auth.MGRAST() Error in auth.MGRAST() : could...

Setting authorization key matR

Do you have the auth.MGRAST() function code in github? I didn't see it but I could try writing it into the environment manually for a quick fix. Thanks, *Dietrich Epp...

Setting authorization key matR

Ok progress! Version 0.9 of call.MGRAST was not appending the key to the URL, so I had to manually load all the updated functions so they were consistent. It seems...

Setting authorization key matR

Never mind... I can download just fine with your code. It just wasn't able to write over old versions of the file 006.biom. Once I deleted, it worked just fine....