HistomicsStream

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Evaluate performance

2

In particular, are we leveraging the graph execution optimizations (e.g., parallelization, memory management, GPU usage) of tensorflow and torch or do we need to do more to get that?

Leengit

The current model may not be so appropriate and it is not trained. Something similar to the model used in `tensorflow_stream.ipynb` would be good but, more importantly, the model should...

Leengit

ENH: Create a convenience function for generating studies

1

Write a simple function that applies a single set of parameters (tile size, overlap, chunk size) to a nested list of slides to generate a study for each list of...

cooperlab

Leengit

SlideFlow's interface is different from HistomicStream's. We should decide whether we want to add functionality to HistomicsStream to support a similar interface. My notes: The SlideFlow interface for dataset management...

Leengit

Leengit

Leengit

Add table contents, etc., similar to [deep_atlas_tutorial.ipynb](https://github.com/Project-MONAI/tutorials/blob/master/deep_atlas/deep_atlas_tutorial.ipynb).

Leengit

Documentation

3

Provide basic documentation on the intent, installation, and utilization of the package. Document the fields and data structures produced by histomics stream.

cooperlab

An error reply from GitHub actions suggests that these permissions be added.

Leengit