Dexin

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icon company Department of Systems Biology, MD Anderson Cancer Center icon location 6767 Bertner Avenue S3.8344 Mitchell BSRB Houston, TX 77030 icon location PhD in GSBS, MD Anderson UTHealth; BM@ZJU

Results 4 comments of Dexin

Modification calling missing for the inter-chromosomal translocated reads

I am wondering whether the above issue is caused by the supplementary alignment.

Modification calling missing for the inter-chromosomal translocated reads

> Hi @DexinYang1998, > > Yes, you are correct - MM, ML and MN tags are currently stripped from records that are marked as supplementary or secondary alignments unless soft...

Indel calling for illumina WGS

Thanks!

6mA modification missing after modkit callmod

Thanks for your help! The light blue the the unmethylated A, and red is the 6mA. The command I used is `modkit call-mods -t 40 in.bam out.bam`