TransposonUltimate
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TransposonUltimate - a holistic set of tools for transposon identification
Hi, Thank you for presenting TransposonDB, which offers a comprehensive TE database. This resource has the potential to be immensely helpful to me. However, I've encountered an issue. I'm seeking...
I'm interested in annotating autonomous vs non autonomous transposons. Is there a means to do that in TransposonUltimate - either in the output or intermediate files? Thanks!
Hi, I found that there are many Plantae sequences and just a little Animalia sequences in TransposonDB.fasta, is that normal? grep ">" TransposonDB.fasta|wc -l 891052 grep ">" TransposonDB.fasta| grep -i...
hiii I was trying to install transposon_annotation_tools. During installation I am getting an error : " Output in format: Requested package -> Available versions". kindly help me to resolve the...
Good afternoon! Please, could you help: I have a large Avena genome, which weight about 3 Gb. When I run ReasonateTE, this program takes just a huge amount of time....
Hello! To use the Prediction evaluation module, you must pass trueLabelFile to the labels input. Can you please tell me how to get these labels?
Hi, I'm stuck in the pipeline with the transposon_annotation_reasonaTE module where it parses all the annotations together. I saw there were a few other similar issues, but I haven't been...