TransposonUltimate

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Question about TransposonDB.fasta

1

Hi, Thank you for presenting TransposonDB, which offers a comprehensive TE database. This resource has the potential to be immensely helpful to me. However, I've encountered an issue. I'm seeking...

CSU-KangHu

Identifying non autonomous transposons

2

I'm interested in annotating autonomous vs non autonomous transposons. Is there a means to do that in TransposonUltimate - either in the output or intermediate files? Thanks!

jannafierst

So many Plantae and so little Animalia

1

Hi, I found that there are many Plantae sequences and just a little Animalia sequences in TransposonDB.fasta, is that normal? grep ">" TransposonDB.fasta|wc -l 891052 grep ">" TransposonDB.fasta| grep -i...

xiekunwhy

Output in format: Requested package -> Available versions

6

hiii I was trying to install transposon_annotation_tools. During installation I am getting an error : " Output in format: Requested package -> Available versions". kindly help me to resolve the...

manaswini12356

Increasing the number of threads

2

Good afternoon! Please, could you help: I have a large Avena genome, which weight about 3 Gb. When I run ReasonateTE, this program takes just a huge amount of time....

yliasolom

Mode 2: Prediction evaluation

3

Hello! To use the Prediction evaluation module, you must pass trueLabelFile to the labels input. Can you please tell me how to get these labels?

Egor-Lebedev

parsing annotations because of mustv2 refineBoundary error

1

Hi, I'm stuck in the pipeline with the transposon_annotation_reasonaTE module where it parses all the annotations together. I saw there were a few other similar issues, but I haven't been...

vkeggers