DeniRibicic

@ondovb It's a melted Phyloseq (uses biom format) object. Basically it is a long data format when melted. There is a sample, abundance and different taxonomy level columns. ``` Sample...

Hi @roblanf, I am experiencing very similar error to one that @avantonder posted: ``` INFO [2020-04-13 13:22:27] Loading input file: 0_basecalled/sequencing_summary.txt INFO [2020-04-13 13:22:32] MinION flowcell detected INFO [2020-04-13 13:22:34]...

@roblanf all the packages were up-to-date, but R was an older version `R version 3.5.1 (2018-07-02) -- "Feather Spray"` Updating to recent version solved the problem `R version 3.6.3 (2020-02-29)...

@roblanf something interesting is happening. When I run the script directly in my shell everything works fine. However, I have incorporated the `MinIONQC.R` in my workflow through a `bash` script...

@roblanf sorry for the late reply. Here is some info: ``` SHELL=/bin/bash SSH_CLIENT=10.218.129.55 55285 22 CONDA_SHLVL=1 CONDA_PROMPT_MODIFIER=(base) LC_NUMERIC=nb_NO.UTF-8 SSH_TTY=/dev/pts/23 CONDA_EXE=/home/denir/anaconda3/bin/conda DESKTOP_MODE=1 _CE_CONDA= CONDA_BACKUP_JAVA_HOME= MAIL=/var/mail/denir PATH=/home/denir/bin:/home/denir/anaconda3/bin:/home/denir/anaconda3/condabin CONDA_PREFIX=/home/denir/anaconda3 SHLVL=1 HOME=/home/denir Ubuntu 16.04...