DelphIONe

Results 11 comments of DelphIONe

How to consider a site as modified ?

Thanks for your tool! I have the same question as Rania "Also, I still have the same question about the results of the linear model, in order to consider a...

No module named 'sklearn.svm.classes'

Same problem here. Thanks for your answer!

Microalgae model

Thanks for your tool ! Do you think this model training protocol could work on RNA ?

Microalgae model

Thanks for your reply! We have tried Epinano or DRUMMER or others but not very successfully for the moment. I'm wondering if to train my model could more effective. Thanks...

0.6.0: TypeError: int() argument must be a string or a number, not 'NoneType'

I have the same problem on fast5 file basecalled with albacore 1.2.5 poretools index ../alba125_1D/workspace/0/* source_filename template_fwd_length complement_rev_length 2d_length asic_id asic_temp heatsink_temp channel exp_start_time exp_start_time_string_date exp_start_time_string_time start_time start_time_string_date start_time_string_time duration...

0.6.0: AttributeError: 'Fast5File' object has no attribute 'read_metadata'

Nobody to help mmokrejs ? I have the same problem and I would like one solution...

epinano_rms.py -> OverflowError: Python int too large to convert to C long

Hi, Thanks for your reply! I have tested by chromosome. On the chromosom I the problem is the same. The chromosome II it's ok ... Splicing mapping can be a...

epinano_rms.py -> OverflowError: Python int too large to convert to C long

I add : for only one chromosom it's ok. For two others it's the same error "python overflow" On one problematic chromosom, I've splitted the bam file in 2 and...

none correlation between modification position and +/- 1

Thanks for your reply and sorry for my delay. I'm intersting by remora and I would like follow your advice but Remora can work by "sample compare" method as Tombo...

Dorado (by modkit dmr) gives different results between replicats

Hello @ArtRand Thanks for your reply. The detected position until now with rep1 are potentially real 6mA because we fall in DRACH motif (or almost by 1 base) The new...