Deepa Maheshvare

@Hrovatin 999 means there is no value reported for that corresponding entry (metabolite concentration or Km or Vmax). Hope this helps!

@matthiaskoenig Hi, I found this link(http://mmtb.tu-bs.de/idparser) for parsing BRENDA ligand ID. For instance, I tried to obtain the mapping for [a few compounds](https://github.com/DeepaMahm/misc/blob/master/Book1.csv) listed in unmapped_substances.txt. The output is BRENDA...

Hi @matthiaskoenig It is now possible to access BRENDA database using zeep in python 3 which was problematic before. This has been fixed by BRENDA in the last week. Please...

Hi @matthiaskoenig This is an update on obtaining `ligandStructureId ` of Brenda compounds, follow-up to the above thread. The zeep interface of Brenda has been fixed a couple of months...

Hi @matthiaskoenig I tried to do the mapping (brenda ligand id to kegg, hmdb and chebi identifiers) via unichem's rest interface. Please check [this](https://github.com/matthiaskoenig/pancreas_model/blob/master/pypancreas/webservices/unichem.py) at your convenience.

``` !/usr/bin/python from zeep import Client import hashlib wsdl = "https://www.brenda-enzymes.org/soap/brenda_zeep.wsdl" password = hashlib.sha256(str("enterpassword").encode('utf-8')).hexdigest() client = Client(wsdl) parameters = ("emailid", password, "ecNumber*1.1.1.1", "organism*Homo sapiens", "kmValue*", "kmValueMaximum*", "substrate*", "commentary*", "ligandStructureId*", "literature*")...

Suggestions?

Hi, Thanks a lot, this works great. Could you please let me know if we can get the indices of the points that are removed? There are values associated with...

Hello, Thank you for the suggestion. I'm sorry, I think I didn't explain the doubt properly in my previous post. `pcloud2 = pcloud1.clone().cut_with_cylinder(r=r, invert=False)` removes the points within the circle...

If I may post another doubt, Can we get a surface plot like the following? I am currently coloring the points based on the values, but not sure how to...