DecodeGenome

Selecting spots from different sections and performing DEG analysis

1

Hi, I am trying to select spots from different sections and do differential gene expression analysis, like your example of Neighborhood analysis, how to perform such analysis within STUtility package?...

Hi nextNEOpi developers: Thank you very much for your previous support. I am running the test sample using nextNEOpi, it appears to create results, but at the end, there is...

pVACtools_generate_protein_seq (test_sample)` terminated with an error exit status (1)

4

Hi nextNEOpi developer, While I ran command line for test sample, it gave me an error as followings, I attached contents from /wynton/group/bivona/Analytic_tools/NextNeoPi/nextNEOpi/work/c5/4d38fd64e93256a050d78f2774d3dd and file from .nextflow.log for your information....

Process `OptiType_RNA (test_sample)` terminated with an error exit status (1)

12

Dear nextNEOpi developers: I use the HPC to run nextNEOpi test sample, I got the error below and I checked the rna_mapped_1.bam and rna_mapped_2.bam file are empty. Please help to...