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Multiple tests failing for R2021a

1

The following tests fail in MATAB R2021a (on macOS 11.3): - DallaMan2007_GlucoseInsulinSystem - TurboSplines - State_Reduction - Fast_Equilibration - Boehm_JProteomeRes2014 - PEtab_Tests

adrianhauber

confidence intervall changes during PLE

1

When i run the PLE analysis I am currently running into the following problem: I execute the commands ``` arPLEInit ple ``` and it calculates the profile likelihoods and the...

cataschlott

I am currently trying to export the `Merkle_JAK2STAT5_PCB2016` model from the examples folder to PEtab by running the `SetupFinal.m` script to load and compile the model with the corresponding data....

vwiela

If the description of a reaction (i.e. last entry in a line in the REACTIONS part of the model def contains a comma, an error is thrown: No error: REACTIONS...

clemenskreutz

Hierarchical optimization in D2D

7

I have implemented a simple form of hierarchical optimization in D2D and I would like to propose to pull this feature upstream. The method of hierarchical optimization is described in...

gdudziuk

Bug in arMyStr2Sym connected to MATLAB version

3

When calling arMyStr2Sym the function call fails. The problem seems to be on line 17 if(str2double(matver.Version) >= 9.4) It branches into the else caluse and causes further problems with symbolic...

laasfeld

Proper license

1

Would it be possible to have a proper license model, e.g. BSD-3 or MIT? The sentence included "The software is open source and free for non-commercial usage and supports parallelization"...

yannikschaelte

Dear d2d team, I am currently trying to export a d2d model into the PEtab format by using `arExportPEtab('model_name', true)`. This model has 4 different preequilibration conditions, ``` >>> length(ar.model(1).ss_condition)...

elbaraim

Hi, i have an observable which is a ratio of two others that are correlated (where the correlation is changing over time). Therefore a t-distribution is a much better assumption...

lohex

There is some code smell in arLink. There are several arguments for adding temporary data points here specifically for arPPL. The datapoints added here are hardcoded to go into the...

JoepVanlier