dREG
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Danko-Lab
Detecting Regulatory Elements using GRO-seq and PRO-seq
Running the test program with R 4.2.2 gives the error in the title and attached below. [error.txt](https://github.com/Danko-Lab/dREG/files/11125016/error.txt) ``` `R version 4.2.2 Patched (2022-11-10 r83330) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu...
I have many questions. Is run_predict.bsh a more advanced version of run_dREG.bsh? I can't find the dREG_model/asvm.RData (asvm.mammal.RData seems to be a sample dataset). Does this mean that run_predict.bsh also...
According to the [rphast package page](https://cran.r-project.org/web/packages/rphast/index.html) on CRAN: > Package ‘rphast’ was removed from the CRAN repository. > > Formerly available versions can be obtained from the archive. > >...
Hi, sorry if I am not supposed to ask such question here, please let me know if there is a designated email or group. Can you please elaborate on how...
I'm getting "Error in device initialization" error when running peak calling with dREG, but the prediction function runs fines. . I'm running on a node with: OS: redhat 7.4 kernel...
I've created a docker container for dreg. Perhaps you want to reference it here, or make your own from my Dockerfile. https://hub.docker.com/r/samesense/dreg-docker/
It'd be really cool if you all had some tagged releases as known reference points so that people trying to ensure consistency in environments could pull them instead of just...
Dear authors, Thanks for your excellent work. I have read your codes but not found how to generate ground truth file (e.g. `***.negative.bed.rdata`, `***.positive.bed.rdata` [link](https://github.com/Danko-Lab/dREG/tree/4a1643a69c36b64ce2b8ba7fb76701e744692e4a/example), `***. grocaptss.bed` [link](https://github.com/Danko-Lab/dREG/blob/4a1643a69c36b64ce2b8ba7fb76701e744692e4a/dREG_paper_analyses/train_nn/deep_generative_model.R#L30) and so...
Hi: I have a question about dREG Gateway(https://dreg.dnasequence.org/create). Is dREG Gateway still available? Why can't I create an account? The web page prompts that an account confirmation request has been...
