dREG

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Error in if (class(x) == "BigMatrix.refer") bigm.internal.nrow(x) else NROW(x) : the condition has length > 1

3

Running the test program with R 4.2.2 gives the error in the title and attached below. [error.txt](https://github.com/Danko-Lab/dREG/files/11125016/error.txt) ``` `R version 4.2.2 Patched (2022-11-10 r83330) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu...

Valravn4

asvm.RData

2

I have many questions. Is run_predict.bsh a more advanced version of run_dREG.bsh? I can't find the dREG_model/asvm.RData (asvm.mammal.RData seems to be a sample dataset). Does this mean that run_predict.bsh also...

withoutH

Cannot install dREG with R 4.0 because rphast is no longer in CRAN

2

According to the [rphast package page](https://cran.r-project.org/web/packages/rphast/index.html) on CRAN: > Package ‘rphast’ was removed from the CRAN repository. > > Formerly available versions can be obtained from the archive. > >...

omsai

How to interpret the probability and max score in the output files?

2

Hi, sorry if I am not supposed to ask such question here, please let me know if there is a designated email or group. Can you please elaborate on how...

MasterChief1O7

peak calling device initialization issue.

4

I'm getting "Error in device initialization" error when running peak calling with dREG, but the prediction function runs fines. . I'm running on a node with: OS: redhat 7.4 kernel...

LnLogN

I've created a docker container for dreg. Perhaps you want to reference it here, or make your own from my Dockerfile. https://hub.docker.com/r/samesense/dreg-docker/

samesense

It'd be really cool if you all had some tagged releases as known reference points so that people trying to ensure consistency in environments could pull them instead of just...

jrdemasi