Dani Bodor
Dani Bodor
I would like to change the paragraph spacing for my cover letter. Using this trick `\verb|\parskip|:\the\parskip\ and \verb|\parindent|:\the\parindent` (from https://tex.stackexchange.com/a/375896/262286) I could find out what the current setting is. I...
It seems that the figure illustrating edge pooling (with caption "Hover over a node (black node) to visualize which edges are gathered and aggregated to produce an embedding for that...
Hi, I tried setting up your tool on our [repo](https://github.com/DeepRank/deeprank-core/pull/433), but it is incorrectly flagging a link as dead: > ERROR: 1 dead links found! > [✖] https://opensource.org/license/apache-2-0/ → Status:...
**Describe the bug** I was unable to pip install deeprank. I tried the stable version with python 3.7 and the development version with python 3.8 (so not all 4 permutations,...
fixes #509 Work in progress. **Done so far**: - Mimics functionality of all modules in pdbprep apart from the pairwise energy calculations. - Functionality currently split into 2 modules: `preprocess`...
- [Note that](https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/pdbintro.html) the record type ATOM contains coordinates for atoms in standard residues, which include nucleic acids as well. So the amino acids are codified the same way as...
I noticed that in processing the querycollection (for both atomic and residue), a number of ValueErrors are raised. The code doesn't crash though. We should investigate why these are raised...
- Find a test file that contains nucleotides. There might be one or more already in the current test files. - Include these in current tests. - Verify that the...
If not all chains contain residue atoms, then some features will not parse properly. For each such feature decide and implement one of the following: - Do not allow the...