Dangoh

Hi Torsten! I've made a custom database for abricate and was wondering if it is possible to point to that particular database when running nullarbor? Those results would be great...

It would be great if you could add the parent directory name of each isolate, to the files in the directory. Makes life easier for other downstream analysis. This could...

mask_gubbins_aln.py issue

2

Hi, I have problems running mask_gubbins_aln.py and get an error saying: Traceback (most recent call last): File "mask_gubbins_aln.py", line 71, in taxon.seq = MutableSeq(taxon.seq) File "/opt/rh/rh-python36/root/usr/lib64/python3.6/site-packages/Bio/Seq.py", line 1663, in __init__...

REAPR

8

Hi, Been running the pipeline and get the following error for FRCBAM and REAPR, however I'm mostly interested in REAPR and can't quite find out the problem. It is installed...

Have installed all dependencies and the 0.5.1 installer crashes just as it is "Ready to install". Any idea how to solve?